Basically when we see the flashbacks at the very start of the film in a computer rotating square like form, thats Alices mind having been reprogrammed by umbrella. Thats why it looks like that inside her head as opposed to what it looked like when she had flashbacks in part 1. Thats also why during the flashback scene you can see a shot of the van carrying carlos, jill, and angie and l.j. leaving the umbrella facility. Then after the flashbacks they show Alices eyes, right before the title of the film comes up on the screen. So those flashbacks Alice is having before the film begins, shes having them post umbrella reprogramming. The same facial expression shot at the end when the doctor says *program alice activated*. is the exact same facial shot of her we get before the title comes up at the start of the movie. As for Alices voiceover at the start of the movie, thats taken from her telling her story to terris camera after Jill hands it to her when all of them are in the van driving to city hall.
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